PUBLICATIONS
Dr. Berman's bibliography on:
The Parasexual Cycle in Candida albicans Provides an Alternative Pathway to Meiosis for the Formation of Recombinant Strains.
Forche A, Alby K, Schaefer D, Johnson A, Berman J, and Bennett R. PLoS Biology. 2008 May 6; 6(5): E110 0001-0014. doi: 10.1371/journal.pbio.0060110
An Isochromosome Confers Drug Resistance In Vivo by Amplification of Two Genes, ERG11 and TAC1.
Selmecki A, Gerami-Nejad M, Paulsen C, Forche A, and Berman J. Molecular Microbiology. 2008 Mar 20; 68(3):624-641. doi: 10.1111/j.1365-2958.2008.06176.x
Dynein-dependent Nuclear Dynamics Affect Morphogenesis in Candida albicans via the Bub2p Spindle Sheckpoint.
Finley K, Bouchonville K, Quick A, and Berman J. Journal of Cell Science. 2008 Feb 15; 121: 466-476. doi: 10.1242/jcs.015172
Haplotype Mapping of a Diploid Non-meiotic Organism Using Existing and Induced Aneuploidies.
Legrande M, Forche A, Selmecki A, Kirkpatrick D, and Berman J. PLoS Genetics. 2007 Jan 4; 4(1): e1 0018-0028. doi: 10.1371/journal.pgen.0040001
2007
Genotypic Evolution of Azole Resistance Mechanisms in Sequential C. albicans Isolates.
Coste A, Selmecki A, Forche A, Berman J, Diogo D, Bougnoux E, d'Enfert C, and Sanglard D. Eukaryotic Cell. 2007 Aug 10; 6: 1889-1904. doi: 10.1128/EC.00151-07
The Pattern and Evolution of Yeast Promoter Bendability.
Tirosh I, Berman J, and Barkai N. Trends in Genetics. 2007 Jul 1; 23(7): 318-321. doi: 10.1016/j.tig.2007.03.015
Global Transcription Profiles of C. albicans and the Comparison with Other Yeast Species.
Bergmann S, Ihmels J, and Berman J. In Candida: Comparative and Functional Genomics. 2007 Mar. Link
2006
Morphogenesis and Cell Cycle Progression in Candida albicans.
Berman, J. Current Opinions in Microbiology. 2006 Oct 20; 9(12): 595-601. doi: 10.1016/j.mib.2006.10.007
Transcript Profiles of Candida albicans Cortical Actin Patch Mutants Reflect Their Cellular Defects: Contribution of the Hog1p and Mkc1p Signaling Pathways.
Oberholzer U, Nantel A, Berman J, and Whiteway M. Eukaryotic Cell. 2006 Aug 5; 5(8): 1252-1265. doi: 10.1128/EC.00385-05
Aneuploidy and Isochromosome Formation in Drug-Resistant Candida albicans.
Selmecki A, Forche A, and Berman J. Science. 2006 Jul 6; 313(5785): 367-370. doi: 10.1126/science.1128242
A Mutation in Tac1p, a Transcription Factor Regulating CDR1 and CDR2, is Coupled with Loss of Heterozygosity at Chromosome 5 to Mediate Antifungal Resistance in Candida albicans.
Coste A, Turner V, Ischer F, Morschhauser J, Forche A, Selmecki A, Berman J, Bille J, and Sanglard D. Genetics. 2006 Apr 1; 172: 2139-2156. doi: 10.1534/genetics.105.054767
2005
Hyphae Drive Nuclear Dynamics and Connect Cell Cycle Progression to Morphogenesis.
Finley K, and Berman J. Microtubules in Candida albicans Eukaryotic Cell. 2005 Oct; 4(10): 1697-1711. doi: 10.1128/EC.4.10.1697-1711.2005
Comparative Gene Expression Analysis by a Differential Clustering Approach: Application to the Candida albicans Transcription Program.
Ihmels J, Bergmann S, Berman J, and Barkai N. PLoS Genetics. 2005 Sep 30; 1(3): 380-393. doi: 10.1371/journal.pgen.0010039
Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage.
Ihmels J, Bergmann S, Gerami-Nejad M, Yanai I, McClellan M, Berman J, and Barkai N. Science. 2005 Aug 5; 309: 938-940. doi: 10.1126/science.1113833
Candida albicans Hyphae Have a Spitzenkörper That is Distinct from the Polarisome Found in Yeast and Pseudohyphae.
Crampin H, Finley K, Gerami-Nejad M, Court H, Gale C, Berman J, and Sudbery P. Journal of Cell Science. 2005 Jul 1; 18(13): 2935-2947. doi: 10.1242/jcs.02414
A Human-Curated Annotation of the Candida albicans Genome.
Braun B, van het Hoog M, d'Enfert C, Martchenko M, Dungan J, Kuo A, Inglis D, Uhl M, Hogues H, Berriman M, Lorenz M, Levitin A, Oberholzer U, Bachewich C, Harcus D, Marcil A, Dignard D, Iouk T, Zito R, Frangeul L, Tekaia F, Rutherford K, Wang E, Munro C, Bates S, Gow N, Hoyer L, Kohler G, Morschhauser J, Newport G, Znaidi S, Raymond M, Turcotte B, Sherlock G, Costanzo M, Ihmels J, Berman J, Sanglard D, Agabian N, Mitchell A, Johnson A, Whiteway M. and Nantel A. PLoS Genetics. 2005 Jun 17; 1(1): 1-22. doi: 10.1371/journal.pgen.0010001
The Mitotic Cyclins Clb2p and Clb4p Affect Morphogenesis in Candida albicans.
Bensen, E., Clemente-Blanco, A., Finley, K., Correa-Bordes, J. and Berman, J. Molecular Biology of the Cell. 2005 May 11; 16:3387-3340. doi: 10.1091/mbc.e04-12-1081
Comparative Genome Hybridization Reveals Widespread Aneuploidy in Candida albicans Laboratory Strains.
Selmecki A, Bergmann S, and Berman J. Molecular Microbiology. 2005 Feb 4; 55(5): 1553-1565. doi: 10.1111/j.1365-2958.2005.04492.x
2004
Yeast Chromatin Assembly Complex 1 Protein Excludes Nonacetylatable Forms of Histone H4 from Chromatin and the Nucleus.
Glowczewski L, Waterborg J, and Berman J. Molecular and Cellular Biology. 2004 Dec; 24(23): 10180-10192. doi: 10.1128/MCB.24.23.10180-10192.2004
Transcriptional Profiling in Candida albicans Reveals New Adaptive Responses to Extracellular pH and Functions for Rim101p.
Bensen E, Martin M, Li M, Berman J, and Davis D. Molecular Microbiology. 2004 Oct 27; 54(5): 1335-1351. doi: 10.1111/j.1365-2958.2004.04350.x
The Distinct Morphogenic States of Candida albicans.
Sudbery P, Gow N, and Berman J. Trends in Microbiology. 2004 Jul 1; 12(7): 317-324. doi: 10.1016/j.tim.2004.05.008
Cell Cycle in Human Fungal Pathogens.
Berman J, and Gow N. Pathogenic Fungi: Structural Biology and Taxonomy. 2004 Jun 1; 101-127.
Cassettes for the PCR-mediated Construction of Regulatable Alleles in C. albicans.
Gerami-Nejad M, Hausauer D, Berman J, and Gale C. Yeast. 2004 Mar 30; 21:429-436. doi: 10.1002/yea.1080
Telomore Cap Components Influence the Rate of Senescence in Telomerase-Deficient Yeast Cells.
Enomoto S, Glowczewski L, Lew-Smith J, and Berman J. Molecular Cellular Biology. 2004 Jan; 24:837-845. doi: 10.1128/mcb.24.2.837-845.2004
2003
Functional Conservation for Dhh1p, a Cytoplasmic DexD/H-box Protein Present in Large Complexes.
Tseng-Rogenski S, Chong J-L, Thomas C, Enomoto S, Berman J, and Change T-H. Nucleic Acids Research. 2003; 31:4995-5002. doi: 10.1093/nar/gkg712