PUBLICATIONS
Dr. Berman's bibliography on:
2023
Protocols for Measuring Tolerant and Heteroresistant Drug Responses of Pathogenic Yeasts.
Lyons N, Berman J. Methods Mol Biol. 2023 Apr 7;2658:67-79. doi: 10.1007/978-1-0716-3155-3_6
The Metabolism of Susceptibility: Clearing the FoG Between Tolerance and Resistance in Candida albicans.
Druseikis M, Mottola A, and Berman J. Curr Clin Microbio Reports. 2023 Mar 16; doi: 10.1007/s40588-023-00189-3
Antifungal Tolerance and Resistance Emerge at Distinct Drug Concentrations and Rely Upon Different Aneuploid Chromosomes.
Yang F, Scopel EFC, Li H, Sun LL, Kawar N, Cao YB, Jiang YY, Berman J. mBio. 2023 Mar 6:e0022723. doi: 10.1128/mbio.00227-23.
2022
Fold-Change of Chromatin Condensation in Yeast is a Conserved Property.
Yamin K, Bijlani S, Berman J, Soni A, Shlomai J, Burogohain BM, Werbner M, Gal-Tanamy M, Matityahu A, and Onn I. Nature Scientific Reports. 2022 Oct 17;12(1)17393. doi: 10.1038/s41598-022-22340-8
The Future of Fungi: Threats and Opportunities.
Case NT, Berman J, Blehert DS, Cramer RA, Cuomo C, Currie CR, Ene IV, Fisher MC, Fritz-Laylin LK, Gerstein AC, Glass NL, Gow NAR, Gurr SJ, Hittinger CT, Hohl TM, Iliev ID, James TY, Jin H, Klein BS, Kronstad JW, Lorch JM, McGovern V, Mitchell AP, Segre JA, Shapiro RS, Sheppard DC, Sil A, Stajich JE, Stukenbrock EE, Taylor JW, Thompson D, Wright GD, Heitman J, Cowen LE. G3 (Bethesda). 2022 Sep 30:jkac224. doi: 10.1093/g3journal/jkac224
Regulation of Heme Utilization and Homeostasis in Candida albicans.
Andrawes N, Weissman Z, Pinsky M, Moshe S, Berman J, and Kornitzer D. PLoS Genetics. 2022 Sep 9;18(9):e1010390. doi: 10.1371/journal.pgen.1010390
The Importance of Antimicrobial Resistance in Medical Mycology.
Gow N, Johnson C, Berman J, Coste A, Cuomo C, Perlin D, Biacnic T, Harrison T, Wiederhold N, Bromley M, Chiller T, and Edgar K. Nature Communications. 2022 Sep 12;13(1):5352. doi: 10.1038/s41467-022-32249-5
An Orthologous Gene Coevolution Network Provides Insight into Eukaryotic Cellular and Genomic Structure and Function.
Steenwyk JL, Phillips MA, Yang F, Date SS, Graham TR, Berman J, Hittinger CT, and Rokas A. Science Advances. 2022 May 6;8(18):eabn0105. doi: 10.1126/sciadv.abn0105
Tackling the Emerging Threat of Antifungal Resistance to Human Health.
Fisher M, Alastruey-Izquierdo A, Berman J, Bicanic T, Bignell E, Bowyer P, Bromley M, Brüggemann R, Garber G, Cornely O, Gurr S, Harrison T, Kuijper E, Rhodes J, Sheppard D, Warris A, White L, Xu J, Zwaan B, and Verweij P. Nature Reviews Microbiology. 2022 Mar 29; doi: 10.1038/s41579-022-00720-1
Microbial Communities Form Rich Extracellular Metabolomes That Foster Metabolic Interactions and Promote Drug Tolerance.
Yu JSL, Correia-Melo C, Zorrilla F, Herrera-Dominguez L, Wu MY, Hartl J, Campbell K, Blasche S, Kreidl M, Egger A-S, Messner CB, Demichev V, Freiwald A, Mullender M, Howell M, Berman J, Patil KR, Alam MT, and Ralser M. Nature Microbiology. 2022 Mar 21; doi: 10.1038/s41564-022-01072-5
2021
Aneuploidy Underlies Tolerance and Cross-Tolerance to Drugs in Candida parapsilosis.
Yang F, Lu H, Wu H, Fang T, Berman J, and Jiang YY. Microbiology Spectrum. 2021 Oct 6;e0050821. doi: 10.1128/Spectrum.00508-21
Adaptation to Fluconazole via Aneuploidy Enables Cross-Adaptation to Amphotericin B and Flucytosine in Cryptococcus neoformans.
Yang F, Gritsenko V, Lu H, Zhen C, Gao L, Berman J, Jiang YY. Microbiol Spectrum. 2021 Sep 29;e0072321. doi: 10.1128/Spectrum.00723-21
Tunicamycin Potentiates Antifungal Drug Tolerance via Aneuploidy in Candida albicans.
Yang F, Gritsenko V, Slor-Futterman Y, Gao L, Zhen C, Lu H, Jiang YY, and Berman J. mBio. 2021 Aug 31;12(4):e0227221. doi: 10.1128/mBio.02272-21
A Gene Coevolution Network Provides Insight Into Eukaryotic Cellular and Genomic Structure and Function.
Steenwyk JL, Phillips MA, Yang F, Date SS, Graham TR, Berman J, Hittinger CT, and Rokas A. bioRxiv. 2021 July 10; doi: 10.1101/2021.07.09.451830
Adaptive Resistance Mutations at Supra-Inhibitory Concentrations Independent of SOS Mutagenesis.
Gutierrez R, Ram Y, Berman J, Marques de Sousa KC, Nachum-Biala Y, Britzi M, Elad D, Glaser G, Covo S, and Harrus S. Mol Biol Evol. 2021 Jun 27; doi: 10.1093/molbev/msab196
Multifactorial Mechanisms of Tolerance to Ketoconazole in Candida albicans.
Xu Y, Lu H, Zho S, Li WQ, Jiang YY, Berman J, and Yang F. Microbiology Spectrum. 2021 Jun 23; doi: 10.1128/Spectrum.00321-21
Aspergillus fumigatus and Aspergillosis: From Basics to Clinics.
Arastehfar A, Carvalho A, Houbraken J, Lombardi L, Garcia-Rubio R, Jenks JD, Rivero-Menendez O, Aljohani R, Jacobsen ID, Berman J, Osherov N, Hedayati MT, Ilkit M, Armstrong-James D, Gabaldón T, Meletiadis J, Kostrzewa M, Pan W, Lass-Flörl C, Perlin DS, Hoenigl M. Studies in Mycology. 2021 May 10;100:100115. doi: 10.1016/j.simyco.2021.100115
The Fitness Costs and Benefits of Trisomy of Each Candida albicans Chromosome.
Yang F, Todd RT, Selmecki A, Jiang YY, Cao YB, and Berman, J. Genetics. 2021 April 9; doi: 10.1093/genetics/iyab056
Adenosine Triphosphate Released by Candida albicans Is Associated with Reduced Skin Infectivity
Zhang S, Edwards TN, Mogavero S, Mathers, AT, Hube B, Berman J, Bougnoux ME, D'Enfert C, Kaplan DH. J Invest Dermatology. 2021. Mar 28; doi: 10.1016/j.jid.2021.03.010
Combining Miconazole and Domiphen Bromide Results in Excess of Reactive Oxygen Species and Killing of Biofilm Cells
Tits J, Berman, J, Cammue BPA, and Thevissen K. Frontiers in Cellular and Developmental Biology. 2021 January 21; doi:10.3389/fcell.2020.617214
Combining Colistin and Fluconazole Synergistically Increases Fungal Membrane Permeability and Antifungal Cidality
Bibi M, Murphy S. Banhamou RI, Rosenberg A, Ulman A, Bicanic T, Fridman M, and Berman J. ACS Infectious Diseases. 2021 January 20; doi:10.1021/acsinfecdis.0c00721
2020
Impact of Tolerance to Fluconazole on Treatment Response in Candida albicans Bloodstream Infection
Levinson T, Dahan A, Novikov A, Paran Y, Berman J, and Ben‐Ami T. Mycoses. 2020 Sep 30; doi: 10.1111/myc.13191
Elevated Vacuolar Uptake of Fluorescently Labeled Antifungal Drug Caspofungin Predicts Echinocandin Resistance in Pathogenic Yeast.
Jaber QZ, Bibi M, Ksiezopolska E, Gabaldon T, Berman J, and Fridman M. ACS Central Science. 2020 Sep 9; doi: 10.1021/acscentsci.0c00813
Evaluation of Microsatellite Typing, ITS Sequencing, AFLP Fingerprinting, MALDI-TOF MS, and Fourier-Transform Infrared Spectroscopy Analysis of Candida auris.
Vatanshenassan M, Boekhout T, Mauder N, Robert V, Maier T, Meis JF, Berman J, Then E, Kostrzewa M, and Hagen F. Journal of Fungi. 2020 Aug 25; 6(3):146. doi: 10.3390/jof6030146
Identification of Essential Genes and Fluconazole Susceptibility Genes in Candida glabrata by Profiling Hermes Transposon Insertions
Gale AN, Sakhawala RM, Levitan A, Sharan R, Berman J, Timp W, and Cunningham KW. G3: Genes, Genomes, Genetics. 2020 Aug 3. doi:10.1534/g3.120.401595