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PUBLICATIONS

Dr. Berman's bibliography on:

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2024

Natural Proteome Diversity Links Aneuploidy Tolerance to Protein Turnover. 

Muenzner J, Trebulle P, Agostini F, Zauber H, Messner CB, Steger M, Kilian C, Lau K, Barthel N, Lehmann A, Textoris-Taube K, Caudal E, Egger AS, Amari F, De Chiara M, Demichev V, Gossmann TI, Mulleder M, Liti G, Schacherer J, Selbach M, Berman J, Ralser M. Nature. 2024 May 22. doi: 10.1038/s41586-024-07442-9.

Phylogenomics Reveals Extensive Misidentification of Fungal Strains from the Genus Aspergillus. 

Steenwyk JL, Balamurugan C, Raja HA, Goncalves C, Li N, Martin F, Berman J, Oberlies NH, Gibbons JG, Goldman GH, Geiser DM, Houbraken J, Hibbett DS, Rokas A. Microbiology Spectrum. 2024 Apr 2;12(4):e0398023. doi: 10.1128/spectrum.03980-23.

Strain Background of Candida Albicans Interacts with SIR2 to Alter Phenotypic Switching.

Woodruff AL, Berman J, Anderson M. Microbiology. 2024 Mar 6;170(3). doi: 10.1099/mic.0.001444.

Step-Wise Evolution of Azole Resistance Through Copy Number Variation Followed by KSR1 Loss of Heterozygosity in Candida albicans.

Zande PV, Gautier C, Kawar N, Maufrais C, Metzner K, Wash E, Beach A, Bracken R, Maciel EI, Fernandes CM, Solis NV,  Del Poeta M, Filler SG, Berman J, Ene IV, Selmecki A. bioRxiv. 2024 March 5; doi: 10.1101/2024.03.05.583528 

Metabolic Sensing Tips the Balance of Drug Tolerance in Fungal Meningitis.

Mottola A, Hartl J, Ralser M, Berman J. Nature Microbiology. 2024 Feb;9(2):316-7. doi: 10.1038/s41564-023-01595-5.

Metabolic Sensing Tips the Balance of Drug Tolerance in Fungal Meningitis.

Mottola A, Hartl J, Ralser M, Berman J. Nature Microbiology. 2024 Feb 5; 9, 316–317. doi: 10.1038/s41564-023-01595-5

2023

Reshaping Echinocandin Antifungal Drugs to Circumvent Glucan Synthase Point-Mutation-Mediated Resistance. 

Jospe-Kaufman M, Ben-Zeev E, Mottola A, Dukhovny A, Berman J, Carmeli S, Fridman M. Angewandte Chemie. 2023 Dec 31:e202314728. doi: 10.1002/anie.202314728.

Candida Albicans Exhibits Heterogeneous and Adaptive Cytoprotective Responses to Anti-Fungal Compounds. 

Dumeaux V, Massahi S, Bettauer V, Mottola A, Dukovny A, Khurdia SS, Costa A, Omran RP, Simpson S, Xie JL, Whiteway M, Berman J, Hallett MT. Elife. 2023 Oct 27;12. doi: 10.7554/eLife.81406.

Protocols for Measuring Tolerant and Heteroresistant Drug Responses of Pathogenic Yeasts. 

Lyons N, Berman J. Methods Mol Biol. 2023 Apr 7;2658:67-79. doi: 10.1007/978-1-0716-3155-3_6 

The Metabolism of Susceptibility: Clearing the FoG Between Tolerance and Resistance in Candida albicans.

Druseikis M, Mottola A, and Berman J. Curr Clin Microbio Reports. 2023 Mar 16; doi: 10.1007/s40588-023-00189-3

Antifungal Tolerance and Resistance Emerge at Distinct Drug Concentrations and Rely Upon Different Aneuploid Chromosomes. 

Yang F, Scopel EFC, Li H, Sun LL, Kawar N, Cao YB, Jiang YY, Berman J. mBio. 2023 Mar 6:e0022723. doi: 10.1128/mbio.00227-23.

2022

Fold-Change of Chromatin Condensation in Yeast is a Conserved Property.

Yamin K, Bijlani S, Berman J, Soni A, Shlomai J, Burogohain BM, Werbner M, Gal-Tanamy M, Matityahu A, and Onn I. Nature Scientific Reports. 2022 Oct 17;12(1)17393. doi: 10.1038/s41598-022-22340-8

The Future of Fungi: Threats and Opportunities.

Case NT, Berman J, Blehert DS, Cramer RA, Cuomo C, Currie CR, Ene IV, Fisher MC, Fritz-Laylin LK, Gerstein AC, Glass NL, Gow NAR, Gurr SJ, Hittinger CT, Hohl TM, Iliev ID, James TY, Jin H, Klein BS, Kronstad JW, Lorch JM, McGovern V, Mitchell AP, Segre JA, Shapiro RS, Sheppard DC, Sil A, Stajich JE, Stukenbrock EE, Taylor JW, Thompson D, Wright GD, Heitman J, Cowen LE. G3 (Bethesda). 2022 Sep 30:jkac224. doi: 10.1093/g3journal/jkac224 

Regulation of Heme Utilization and Homeostasis in Candida albicans.

Andrawes N, Weissman Z, Pinsky M, Moshe S, Berman J, and Kornitzer D. PLoS Genetics. 2022 Sep 9;18(9):e1010390. doi: 10.1371/journal.pgen.1010390

The Importance of Antimicrobial Resistance in Medical Mycology.

Gow N, Johnson C, Berman J, Coste A, Cuomo C, Perlin D, Biacnic T, Harrison T, Wiederhold N, Bromley M, Chiller T, and Edgar K. Nature Communications. 2022 Sep 12;13(1):5352. doi: 10.1038/s41467-022-32249-5

An Orthologous Gene Coevolution Network Provides Insight into Eukaryotic Cellular and Genomic Structure and Function.

Steenwyk JL, Phillips MA, Yang F, Date SS, Graham TR, Berman J, Hittinger CT, and Rokas A. Science Advances. 2022 May 6;8(18):eabn0105. doi: 10.1126/sciadv.abn0105

Tackling the Emerging Threat of Antifungal Resistance to Human Health.

Fisher M, Alastruey-Izquierdo A, Berman J, Bicanic T, Bignell E, Bowyer P, Bromley M, Brüggemann R, Garber G, Cornely O, Gurr S, Harrison T, Kuijper E, Rhodes J, Sheppard D, Warris A, White L, Xu J, Zwaan B, and Verweij P.  Nature Reviews Microbiology. 2022 Mar 29; doi: 10.1038/s41579-022-00720-1

Microbial Communities Form Rich Extracellular Metabolomes That Foster Metabolic Interactions and Promote Drug Tolerance.

Yu JSL, Correia-Melo C, Zorrilla F, Herrera-Dominguez L, Wu MY, Hartl J, Campbell K, Blasche S, Kreidl M, Egger A-S, Messner CB, Demichev V, Freiwald A, Mullender M, Howell M, Berman J, Patil KR, Alam MT, and Ralser M. Nature Microbiology. 2022 Mar 21; doi: 10.1038/s41564-022-01072-5

2021

Aneuploidy Underlies Tolerance and Cross-Tolerance to Drugs in Candida parapsilosis.

Yang F, Lu H, Wu H, Fang T, Berman J, and Jiang YY. Microbiology Spectrum. 2021 Oct 6;e0050821. doi: 10.1128/Spectrum.00508-21

Adaptation to Fluconazole via Aneuploidy Enables Cross-Adaptation to Amphotericin B and Flucytosine in Cryptococcus neoformans.

Yang F, Gritsenko V, Lu H, Zhen C, Gao L, Berman J, Jiang YY. Microbiol Spectrum. 2021 Sep 29;e0072321. doi: 10.1128/Spectrum.00723-21

Tunicamycin Potentiates Antifungal Drug Tolerance via Aneuploidy in Candida albicans.

Yang F, Gritsenko V, Slor-Futterman Y, Gao L, Zhen C, Lu H, Jiang YY, and Berman J. mBio. 2021 Aug 31;12(4):e0227221. doi: 10.1128/mBio.02272-21

A Gene Coevolution Network Provides Insight Into Eukaryotic Cellular and Genomic Structure and Function.

Steenwyk JL, Phillips MA, Yang F, Date SS, Graham TR, Berman J, Hittinger CT, and Rokas A. bioRxiv. 2021 July 10; doi: 10.1101/2021.07.09.451830

Adaptive Resistance Mutations at Supra-Inhibitory Concentrations Independent of SOS Mutagenesis.

Gutierrez R, Ram Y, Berman J, Marques de Sousa KC, Nachum-Biala Y, Britzi M, Elad D, Glaser G, Covo S, and Harrus S. Mol Biol Evol. 2021 Jun 27; doi: 10.1093/molbev/msab196

Multifactorial Mechanisms of Tolerance to Ketoconazole in Candida albicans.

Xu Y, Lu H, Zho S, Li WQ, Jiang YY, Berman J, and Yang F. Microbiology Spectrum. 2021 Jun 23; doi: 10.1128/Spectrum.00321-21

Aspergillus fumigatus and Aspergillosis: From Basics to Clinics.

Arastehfar A, Carvalho A, Houbraken J, Lombardi L, Garcia-Rubio R, Jenks JD, Rivero-Menendez O, Aljohani R, Jacobsen ID, Berman J, Osherov N, Hedayati MT, Ilkit M, Armstrong-James D, Gabaldón T, Meletiadis J, Kostrzewa M, Pan W, Lass-Flörl C, Perlin DS, Hoenigl M. Studies in Mycology. 2021 May 10;100:100115. doi: 10.1016/j.simyco.2021.100115

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