PUBLICATIONS
Dr. Berman's bibliography on:
2025
The Impact of Phenotypic Heterogeneity on Fungal Pathogenicity and Drug Resistance.
Kozubowski L, Berman J. FEMS Microbiology Reviews. 2025 Jan 14;49. doi: 10.1093/femsre/fuaf001
2024
Natural Proteome Diversity Links Aneuploidy Tolerance to Protein Turnover.
Muenzner J, Trebulle P, Agostini F, Zauber H, Messner CB, Steger M, Kilian C, Lau K, Barthel N, Lehmann A, Textoris-Taube K, Caudal E, Egger AS, Amari F, De Chiara M, Demichev V, Gossmann TI, Mulleder M, Liti G, Schacherer J, Selbach M, Berman J, Ralser M. Nature. 2024 May 22. doi: 10.1038/s41586-024-07442-9.
Collateral Sensitivity Counteracts the Evolution of Antifungal Drug Resistance in Candida auris.
Carolus H, Sofras D, Boccarella G, Jacobs S, Biriukov V, Goossens L, Chen A, Vantyghem I, Verbeeck T, Pierson S, Romero CL, Steenackers H, Lagrou K, van den Berg P, Berman J, Gabaldon T, Van Dijck P. Nat Microbiol. 2024 Oct 29. doi: 10.1038/s41564-024-01811-w
Step-Wise Evolution of Azole Resistance Through Copy Number Variation Followed by KSR1 Loss of Heterozygosity in Candida albicans.
Zande PV, Gautier C, Kawar N, Maufrais C, Metzner K, Wash E, Beach A, Bracken R, Maciel EI, Pereira de Sa N, Fernandes CM, Solis NV, Del Poeta M, Filler SG, Berman J, Ene IV, Selmecki A. PLoS Pathogen. 2024 Aug 30; 20(8):e1012497. doi: 10.1371/journal.ppat.1012497
Phylogenomics Reveals Extensive Misidentification of Fungal Strains from the Genus Aspergillus.
Steenwyk JL, Balamurugan C, Raja HA, Goncalves C, Li N, Martin F, Berman J, Oberlies NH, Gibbons JG, Goldman GH, Geiser DM, Houbraken J, Hibbett DS, Rokas A. Microbiology Spectrum. 2024 Apr 2;12(4):e0398023. doi: 10.1128/spectrum.03980-23.
Strain Background of Candida albicans Interacts with SIR2 to Alter Phenotypic Switching.
Woodruff AL, Berman J, Anderson M. Microbiology. 2024 Mar 6;170(3). doi: 10.1099/mic.0.001444.
Beyond Resistance: Antifungal Heteroresistance and Antifungal Tolerance in Fungal Pathogens.
Yang F, Berman J. Curr Opin Microbiol. 2024 Feb 23. doi: 10.1016/j.mib.2024.102439. Publically available version here.
Metabolic Sensing Tips the Balance of Drug Tolerance in Fungal Meningitis.
Mottola A, Hartl J, Ralser M, Berman J. Nature Microbiology. 2024 Feb;9(2):316-7. doi: 10.1038/s41564-023-01595-5.
2023
Reshaping Echinocandin Antifungal Drugs to Circumvent Glucan Synthase Point-Mutation-Mediated Resistance.
Jospe-Kaufman M, Ben-Zeev E, Mottola A, Dukhovny A, Berman J, Carmeli S, Fridman M. Angewandte Chemie. 2023 Dec 31:e202314728. doi: 10.1002/anie.202314728.
Candida Albicans Exhibits Heterogeneous and Adaptive Cytoprotective Responses to Anti-Fungal Compounds.
Dumeaux V, Massahi S, Bettauer V, Mottola A, Dukovny A, Khurdia SS, Costa A, Omran RP, Simpson S, Xie JL, Whiteway M, Berman J, Hallett MT. Elife. 2023 Oct 27;12. doi: 10.7554/eLife.81406.
Protocols for Measuring Tolerant and Heteroresistant Drug Responses of Pathogenic Yeasts.
Lyons N, Berman J. Methods Mol Biol. 2023 Apr 7;2658:67-79. doi: 10.1007/978-1-0716-3155-3_6
The Metabolism of Susceptibility: Clearing the FoG Between Tolerance and Resistance in Candida albicans.
Druseikis M, Mottola A, and Berman J. Curr Clin Microbio Reports. 2023 Mar 16; doi: 10.1007/s40588-023-00189-3
Antifungal Tolerance and Resistance Emerge at Distinct Drug Concentrations and Rely Upon Different Aneuploid Chromosomes.
Yang F, Scopel EFC, Li H, Sun LL, Kawar N, Cao YB, Jiang YY, Berman J. mBio. 2023 Mar 6:e0022723. doi: 10.1128/mbio.00227-23.
2022
Fold-Change of Chromatin Condensation in Yeast is a Conserved Property.
Yamin K, Bijlani S, Berman J, Soni A, Shlomai J, Burogohain BM, Werbner M, Gal-Tanamy M, Matityahu A, and Onn I. Nature Scientific Reports. 2022 Oct 17;12(1)17393. doi: 10.1038/s41598-022-22340-8
The Future of Fungi: Threats and Opportunities.
Case NT, Berman J, Blehert DS, Cramer RA, Cuomo C, Currie CR, Ene IV, Fisher MC, Fritz-Laylin LK, Gerstein AC, Glass NL, Gow NAR, Gurr SJ, Hittinger CT, Hohl TM, Iliev ID, James TY, Jin H, Klein BS, Kronstad JW, Lorch JM, McGovern V, Mitchell AP, Segre JA, Shapiro RS, Sheppard DC, Sil A, Stajich JE, Stukenbrock EE, Taylor JW, Thompson D, Wright GD, Heitman J, Cowen LE. G3 (Bethesda). 2022 Sep 30:jkac224. doi: 10.1093/g3journal/jkac224
Regulation of Heme Utilization and Homeostasis in Candida albicans.
Andrawes N, Weissman Z, Pinsky M, Moshe S, Berman J, and Kornitzer D. PLoS Genetics. 2022 Sep 9;18(9):e1010390. doi: 10.1371/journal.pgen.1010390
The Importance of Antimicrobial Resistance in Medical Mycology.
Gow N, Johnson C, Berman J, Coste A, Cuomo C, Perlin D, Biacnic T, Harrison T, Wiederhold N, Bromley M, Chiller T, and Edgar K. Nature Communications. 2022 Sep 12;13(1):5352. doi: 10.1038/s41467-022-32249-5
An Orthologous Gene Coevolution Network Provides Insight into Eukaryotic Cellular and Genomic Structure and Function.
Steenwyk JL, Phillips MA, Yang F, Date SS, Graham TR, Berman J, Hittinger CT, and Rokas A. Science Advances. 2022 May 6;8(18):eabn0105. doi: 10.1126/sciadv.abn0105
Tackling the Emerging Threat of Antifungal Resistance to Human Health.
Fisher M, Alastruey-Izquierdo A, Berman J, Bicanic T, Bignell E, Bowyer P, Bromley M, Brüggemann R, Garber G, Cornely O, Gurr S, Harrison T, Kuijper E, Rhodes J, Sheppard D, Warris A, White L, Xu J, Zwaan B, and Verweij P. Nature Reviews Microbiology. 2022 Mar 29; doi: 10.1038/s41579-022-00720-1
Microbial Communities Form Rich Extracellular Metabolomes That Foster Metabolic Interactions and Promote Drug Tolerance.
Yu JSL, Correia-Melo C, Zorrilla F, Herrera-Dominguez L, Wu MY, Hartl J, Campbell K, Blasche S, Kreidl M, Egger A-S, Messner CB, Demichev V, Freiwald A, Mullender M, Howell M, Berman J, Patil KR, Alam MT, and Ralser M. Nature Microbiology. 2022 Mar 21; doi: 10.1038/s41564-022-01072-5
2021
Aneuploidy Underlies Tolerance and Cross-Tolerance to Drugs in Candida parapsilosis.
Yang F, Lu H, Wu H, Fang T, Berman J, and Jiang YY. Microbiology Spectrum. 2021 Oct 6;e0050821. doi: 10.1128/Spectrum.00508-21
Adaptation to Fluconazole via Aneuploidy Enables Cross-Adaptation to Amphotericin B and Flucytosine in Cryptococcus neoformans.
Yang F, Gritsenko V, Lu H, Zhen C, Gao L, Berman J, Jiang YY. Microbiol Spectrum. 2021 Sep 29;e0072321. doi: 10.1128/Spectrum.00723-21
Tunicamycin Potentiates Antifungal Drug Tolerance via Aneuploidy in Candida albicans.
Yang F, Gritsenko V, Slor-Futterman Y, Gao L, Zhen C, Lu H, Jiang YY, and Berman J. mBio. 2021 Aug 31;12(4):e0227221. doi: 10.1128/mBio.02272-21
A Gene Coevolution Network Provides Insight Into Eukaryotic Cellular and Genomic Structure and Function.
Steenwyk JL, Phillips MA, Yang F, Date SS, Graham TR, Berman J, Hittinger CT, and Rokas A. bioRxiv. 2021 July 10; doi: 10.1101/2021.07.09.451830
Adaptive Resistance Mutations at Supra-Inhibitory Concentrations Independent of SOS Mutagenesis.
Gutierrez R, Ram Y, Berman J, Marques de Sousa KC, Nachum-Biala Y, Britzi M, Elad D, Glaser G, Covo S, and Harrus S. Mol Biol Evol. 2021 Jun 27; doi: 10.1093/molbev/msab196