PUBLICATIONS
Dr. Berman's bibliography on:
diskImageR: Quantification of Resistance and Tolerance to Antimicrobial Drugs Using Disk Diffusion Assays.
Gerstein C, Rosenberg A, Hecht I, and Berman J. Microbiology. 2016 Jul 1. doi:10.1099/mic.0.000295
Candida albicans Repetitive Elements Display Epigenetic Diversity and Plasticity.
Freire-Beneitez V, Gourlay S, Tarrant D, Berman J, and Buscaino A. Scientific Reports. 2016 Mar 14; 6:22989. doi:10.1038/srep22989
Ploidy Plasticity: A Rapid and Reversible Strategy for Adaptation to Stress.
Berman J. FEMS Yeast Research. 2016 Mar 4; 16(3). doi:10.1093/femsyr/fow020
High Frame-Rate Resolution of Cell Division During Candida albicans Filamentation.
Thompson D, Berman J, and Brand A. Fungal Genetics and Biology. 2016 Mar; 88:54-58. doi:10.1016/j.fgb.2016.02.001
2015
Polyploid Titan Cells Produce Haploid and Aneuploid Progeny to Promote Stress Adaptation.
Gerstein A, Fu S, Mukaremera L, Li Z, Ormerod K, Fraser J, Berman J, and Nielsen K. mBio. 2015 Oct 13; 6(5):e01340-15. doi: 10.1128/mBio.01340-15
Physical Limits on Kinesin-5 Mediated Chromosome Congression in the Smallest Mitotic Spindles.
McCoy K, Tubman E, Claas A, Tank D, Applen C, O'Toole E, Berman J, and Odde D. Molecular Biology of the Cell. 2015 Sep 15; 5;26(22):3999-4014. doi: 10.1091/mbc.E14-10-1454
Shift and Adapt: The Costs and Benefits of Karyotype Variations.
Gerstein A, and Berman J. Curr Opin Microbiol. 2015 Aug 25. doi: 10.1016/j.mib.2015.06.010
Parasexual Ploidy Reduction Drives Population Heterogeneity Through Random and Transient Aneuploidy in C. albicans.
Hickman M, Paulson C, Dudley A, and Berman J. GENETICS. 2015 Jul 1. doi: 10.1534/genetics.115.178020
Real-Time Evolution of a Subtelomeric Gene Family in Candida albicans.
Anderson M, Wigen L, Burrack L, and Berman J, GENETICS. 2015 Jul 1. doi: 10.1534/genetics.115.177451
Candida albicans Morphology and Dendritic Cell Subsets Determine T Helper Cell Differentiation.
Kashem S, Igyarto B, Gerami-Nejad M, Kumamoto Y, Mohammed J, Jarrett E, Drummond R, Zurawski S, Zurawski G, Berman J, Iwasaki A, Brown G, and Kaplan D. IMMUNITY. 2015 Feb 17. 42(2):356-66. doi: 10.1016/j.immuni.2015.01.008
Telomeric ORFS in Candida albicans
Sullivan D, Berman J, Myers L, and Moran G. PLoS Pathogens. 2015 Feb 12; 11(2): e1004614. doi:10.1371/journal.ppat.1004614
The Evolution of Drug Resistance in Clinical Isolates of Candida albicans.
Ford C, Funt J, Abbey D, Issi L, Guiducci C, Martinez D, Delorey T, Li B, White T, Cuomo C, Rao R, Berman J, Thompson D, and Regev A. eLife 2015 Feb 3;4:e00662. doi: 10.7554/eLife.00662
2014
Yeast Mapping Analysis Pipeline (YMAP) - Visualization of Copy Number Variation and Loss of Heterozygosity in Eukaryotic Pathogens.
Abbey D, Funt J, Thompson D, Regev A, Myers C, and Berman J. Genome Medicine. 2014 Nov 20;6(100) doi: 10.1186/s13073-014-0100-8
Telomeric ORFs (TLOs) in Candida spp. Encode Mediator Subunits That Regulate Distinct Virulence Traits.
Haran J, Boyle H, Hokamp K, Yeomans T, Liu Z, Michael C, Fleming A, Anderson M, Berman J, Myers L, Sullivan D, and Moran G. 2014. PLos Genetics. 2014 Oct 30; 10(10): e1004658. doi: 10.1371/journal.pgen.1004658
Origin Replication Complex Binding, Nucleosome Depletion Patters, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres.
Tsai H, Baller J, Laichko I, Koren A, Burrack L, Hickman N, Thevandavkkam M, Rusche L, and Berman J. mBio. 2014 Sept 2; 5(5): e01703-14. doi:10.1128/mbio.01703-14
Rapid Mechanisms for Generating Genome Diversity: Whole Ploidy Shifts, Aneuploidy, and Loss of Heterozygosity.
Bennett R, Forche A, and Berman J. Genome Research. 2014 Jul 31; 4(10): pii: a019604. doi: 10.1101/cshperspect.a019604
Silencing is Noisy: Population and Cell Level Noise in Telomere-Adjacent Genes is Dependent on Telomere Position and Sir2.
Anderson M, Gerstein A, Wigen L, Baller J, and Berman J. PLoS Genetics. 2014 Jul 24; 10(7): e1004436. doi: 10.1371/journal.pgen.1004436
A Tetraploid Intermediate Precedes Aneuploid Formation in Yeasts Exposed to Fluconazole.
Harrison B, Hashemi J, Bibi M, Pulver R, Bavli D, Nahmias Y, Wellington M, Sapiro G, and Berman J. PLoS Biology. 2014 May 18; 12(3):e1001815. doi: 10.1371/journal.pbio.1001815
Genetic and Phenotypic Intra-Species Variation in Candida albicans.
Hirakawa M, Martinez D, Sakthikumar S, Anderson M, Berlin A, Gujja S, Zeng Q, Zisson E, Wang J, Greenberg J., Berman J, Bennett R, and Cuomo C. Genome Research.. 2014 Mar; doi:10.1101/gr.174623.114
Targeting the Adaptability of Heterogeneous Aneuploids.
Chen G, Mulla W, Kucharavy A, Tsai H, Rubinstein B, Conkright J, McCroskey S, Bradford W, Weems L, Haug J, Seidel C, Berman J, and Li R. CELL. 2014 Feb 12; 12;160(4):771-84. doi: 10.1016/j.cell.2015.01.026
2013
Monopolin Recruits Condensin to Organize Centromere DNA and Repetitive DNA Sequences.
Burrack L, Applen S, Clancey S, Chacon J, Gardner M, and Berman J. Molecular Biology of the Cell. 2013 Jul 24; 24(18):2807-19. doi: 10.1091/mbc.E13-05-0229
Shuttle vectors for facile gap repair cloning and integration into a neutral locus in Candida albicans.
Gerami-Nejad M, Zacchi L, McClellan M, MatterK, and Berman J. Microbiology. 2013 Mar 1; 159(Pt 3):565-79. doi: 10.1099/mic.0.064097-0
The 'Obligate Diploid' Candida albicans Forms Mating-Competent Haploids.
Hickman M, Zeng G, Forche A, Hirakawa M, Abbey D, Harrison B, Wang Y-M, Su C-H, Bennett R, Wang Y, and Berman J. Nature. 2013 Jan 30; 494:55-59. doi: 10.1038/nature11865
2012
The Three Clades of the Telomere-Associated 1 TLO Gene Family of Candida albicans Have Different Splicing, Localization and Expression Features.
Anderson M, Baller J, Dulmage K, Wigen L, and Berman J. Eukaryotic Cell. 2012 Aug 24; 11(10): 1268-1275. doi: 10.1128/EC.00230-12
Quick Guide: Candida albicans.
Berman J. Current Biology. 2012 Aug 21; 22(16) doi: 10.1016/j.cub.2012.05.043